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Biochemical Thermodynamics Applications Of Mathmatica

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Energy Information Feedback Adaptation and Self organization

Energy  Information  Feedback  Adaptation  and Self organization Book
Author : Spyros G Tzafestas
Publisher : Springer
Release : 2018-01-03
ISBN : 3319669990
File Size : 42,6 Mb
Language : En, Es, Fr and De

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Book Summary :

This unique book offers a comprehensive and integrated introduction to the five fundamental elements of life and society: energy, information, feedback, adaptation, and self-organization. It is divided into two parts. Part I is concerned with energy (definition, history, energy types, energy sources, environmental impact); thermodynamics (laws, entropy definitions, energy, branches of thermodynamics, entropy interpretations, arrow of time); information (communication and transmission, modulation–demodulation, coding–decoding, information theory, information technology, information science, information systems); feedback control (history, classical methodologies, modern methodologies); adaptation (definition, mechanisms, measurement, complex adaptive systems, complexity, emergence); and self-organization (definitions/opinions, self-organized criticality, cybernetics, self-organization in complex adaptive systems, examples in nature). In turn, Part II studies the roles, impacts, and applications of the five above-mentioned elements in life and society, namely energy (biochemical energy pathways, energy flows through food chains, evolution of energy resources, energy and economy); information (information in biology, biocomputation, information technology in office automation, power generation/distribution, manufacturing, business, transportation), feedback (temperature, water, sugar and hydrogen ion regulation, autocatalysis, biological modeling, control of hard/technological and soft/managerial systems), adaptation and self-organization (ecosystems, climate change, stock market, knowledge management, man-made self-organized controllers, traffic lights control).

Biochemical Thermodynamics

Biochemical Thermodynamics Book
Author : Robert A. Alberty
Publisher : John Wiley & Sons
Release : 2006-03-31
ISBN : 0470036451
File Size : 27,6 Mb
Language : En, Es, Fr and De

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Book Summary :

Navigate the complexities of biochemical thermodynamics with Mathematica(r) Chemical reactions are studied under the constraints of constant temperature and constant pressure; biochemical reactions are studied under the additional constraints of pH and, perhaps, pMg or free concentrations of other metal ions. As more intensive variables are specified, more thermodynamic properties of a system are defined, and the equations that represent thermodynamic properties as a function of independent variables become more complicated. This sequel to Robert Alberty's popular Thermodynamics of Biochemical Reactions describes how researchers will find Mathematica(r) a simple and elegant tool, which makes it possible to perform complex calculations that would previously have been impractical. Biochemical Thermodynamics: Applications of Mathematica(r) provides a comprehensive and rigorous treatment of biochemical thermodynamics using Mathematica(r) to practically resolve thermodynamic issues. Topics covered include: * Thermodynamics of the dissociation of weak acids * Apparent equilibrium constants * Biochemical reactions at specified temperatures and various pHs * Uses of matrices in biochemical thermodynamics * Oxidoreductase, transferase, hydrolase, and lyase reactions * Reactions at 298.15K * Thermodynamics of the binding of ligands by proteins * Calorimetry of biochemical reactions Because Mathematica(r) allows the intermingling of text and calculations, this book has been written in Mathematica(r) and includes a CD-ROM containing the entire book along with macros that help scientists and engineers solve their particular problems.

Biological Thermodynamics

Biological Thermodynamics Book
Author : Donald T. Haynie
Publisher : Cambridge University Press
Release : 2001-03
ISBN : 9780521795494
File Size : 48,9 Mb
Language : En, Es, Fr and De

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Book Summary :

An accessible introduction to thermodynamics for undergraduate biology and biochemistry students.

Thermodynamics of Biochemical Reactions

Thermodynamics of Biochemical Reactions Book
Author : Robert A. Alberty
Publisher : John Wiley & Sons
Release : 2005-01-28
ISBN : 0471623555
File Size : 29,5 Mb
Language : En, Es, Fr and De

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Book Summary :

Thermodynamics of Biochemical Reactions emphasizes the fundamental equations of thermodynamics and the application of these equations to systems of biochemical reactions. This emphasis leads to new thermodynamic potentials that provide criteria for spontaneous change and equilibrium under the conditions in a living cell.

Modern Thermodynamics for Chemists and Biochemists

Modern Thermodynamics for Chemists and Biochemists Book
Author : Dennis Sherwood,Paul Dalby
Publisher : Oxford University Press
Release : 2018-03-08
ISBN : 0198782950
File Size : 30,6 Mb
Language : En, Es, Fr and De

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Book Summary :

Thermodynamics is fundamental to university and college curricula in chemistry, physics, engineering and many life sciences around the world. It is also notoriously difficult for students to understand, learn and apply. What makes this book different, and special, is the clarity of the text. The writing style is fluid, natural and lucid, and everything is explained in a logical and transparent manner. Thermodynamics is a deep, and important, branch of science, and this book does not make it "easy". But it does make it intelligible. This book introduces a new, 'Fourth Law' of Thermodynamics' based on the notion of Gibbs free energy, which underpins almost every application of thermodynamics and which the authors claim is worthy of recognition as a 'law'. The last four chapters bring thermodynamics into the twenty-first century, dealing with bioenergetics (how living systems capture and use free energy), macromolecule assembly (how proteins fold), and macromolecular aggregation (how, for example, virus capsids assemble). This is of great current relevance to students of biochemistry, biochemical engineering and pharmacy, and is covered in very few other texts on thermodynamics. The book also contains many novel and effective examples, such as the explanation of why friction is irreversible, the proof of the depression of the freezing point, and the explanation of the biochemical standard state.

Enzymes and Coenzymes Advances in Research and Application 2012 Edition

Enzymes and Coenzymes   Advances in Research and Application  2012 Edition Book
Author : Anonim
Publisher : ScholarlyEditions
Release : 2012-12-26
ISBN : 1464990581
File Size : 35,6 Mb
Language : En, Es, Fr and De

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Book Summary :

Enzymes and Coenzymes—Advances in Research and Application: 2012 Edition is a ScholarlyEditions™ eBook that delivers timely, authoritative, and comprehensive information about Enzymes and Coenzymes. The editors have built Enzymes and Coenzymes—Advances in Research and Application: 2012 Edition on the vast information databases of ScholarlyNews.™ You can expect the information about Enzymes and Coenzymes in this eBook to be deeper than what you can access anywhere else, as well as consistently reliable, authoritative, informed, and relevant. The content of Enzymes and Coenzymes—Advances in Research and Application: 2012 Edition has been produced by the world’s leading scientists, engineers, analysts, research institutions, and companies. All of the content is from peer-reviewed sources, and all of it is written, assembled, and edited by the editors at ScholarlyEditions™ and available exclusively from us. You now have a source you can cite with authority, confidence, and credibility. More information is available at http://www.ScholarlyEditions.com/.

Information Thermodynamics on Causal Networks and its Application to Biochemical Signal Transduction

Information Thermodynamics on Causal Networks and its Application to Biochemical Signal Transduction Book
Author : Sosuke Ito
Publisher : Springer
Release : 2016-07-16
ISBN : 981101664X
File Size : 54,9 Mb
Language : En, Es, Fr and De

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Book Summary :

In this book the author presents a general formalism of nonequilibrium thermodynamics with complex information flows induced by interactions among multiple fluctuating systems. The author has generalized stochastic thermodynamics with information by using a graphical theory. Characterizing nonequilibrium dynamics by causal networks, he has obtained a novel generalization of the second law of thermodynamics with information that is applicable to quite a broad class of stochastic dynamics such as information transfer between multiple Brownian particles, an autonomous biochemical reaction, and complex dynamics with a time-delayed feedback control. This study can produce further progress in the study of Maxwell’s demon for special cases. As an application to these results, information transmission and thermodynamic dissipation in biochemical signal transduction are discussed. The findings presented here can open up a novel biophysical approach to understanding information processing in living systems.

Applications of Automata Theory and Algebra

Applications of Automata Theory and Algebra Book
Author : John L. Rhodes,Chrystopher L. Nehaniv
Publisher : World Scientific
Release : 2010
ISBN : 9812836969
File Size : 37,5 Mb
Language : En, Es, Fr and De

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Book Summary :

This book was originally written in 1969 by Berkeley mathematician John Rhodes. It is the founding work in what is now called algebraic engineering, an emerging field created by using the unifying scheme of finite state machine models and their complexity to tie together many fields: finite group theory, semigroup theory, automata and sequential machine theory, finite phase space physics, metabolic and evolutionary biology, epistemology, mathematical theory of psychoanalysis, philosophy, and game theory. The author thus introduced a completely original algebraic approach to complexity and the understanding of finite systems. The unpublished manuscript, often referred to as "The Wild Book," became an underground classic, continually requested in manuscript form, and read by many leading researchers in mathematics, complex systems, artificial intelligence, and systems biology. Yet it has never been available in print until now. This first published edition has been edited and updated by Chrystopher Nehaniv for the 21st century. Its novel and rigorous development of the mathematical theory of complexity via algebraic automata theory reveals deep and unexpected connections between algebra (semigroups) and areas of science and engineering. Co-founded by John Rhodes and Kenneth Krohn in 1962, algebraic automata theory has grown into a vibrant area of research, including the complexity of automata, and semigroups and machines from an algebraic viewpoint, and which also touches on infinite groups, and other areas of algebra. This book sets the stage for the application of algebraic automata theory to areas outside mathematics. The material and references have been brought up to date bythe editor as much as possible, yet the book retains its distinct character and the bold yet rigorous style of the author. Included are treatments of topics such as models of time as algebra via semigroup theory; evolution-complexity relations applicable to both ontogeny and evolution; an approach to classification of biological reactions and pathways; the relationships among coordinate systems, symmetry, and conservation principles in physics; discussion of "punctuated equilibrium" (prior to Stephen Jay Gould); games; and applications to psychology, psychoanalysis, epistemology, and the purpose of life. The approach and contents will be of interest to a variety of researchers and students in algebra as well as to the diverse, growing areas of applications of algebra in science and engineering. Moreover, many parts of the book will be intelligible to non-mathematicians, including students and experts from diverse backgrounds.